Table 1 Spearman correlation coefficients for the performance of Scallop, StringTie2, and StringTie2 with super-reads on simulated short-read data. “Spearman predicted” only includes transcripts that each tool assembled. For non-assembled transcripts in “Spearman all,” the predicted expression was set to zero

From: Transcriptome assembly from long-read RNA-seq alignments with StringTie2