From: Host-associated microbiomes are predicted by immune system complexity and climate
Metadata field | Description | Full dataset | Internal | External | Marine_external |
---|---|---|---|---|---|
Samples | sample runs included in this study | 15,790 | 741 | 1193 | 266 |
sOTU | exact sequence variants (sub-operational taxonomic units) | 175,709 | 17,544a | 28,410a | 5.077a |
Publications (by doi) | digital object identifier accession number of published studies | 51 | 23 | 13 | 6 |
Host Kingdom | 2 | 2 | 2 | 2 | |
Host Phyllum | 8 | 3 | 2 | 4 | |
Host Class | 16 | 7 | 5 | 8 | |
Host Order | 80 | 26 | 23 | 27 | |
Host Family | 177 | 65 | 52 | 45 | |
Host Genus | 427 | 171 | 106 | 58 | |
Host species name | full scientific name of host organism | 654 | 204 | 239 | 78 |
Host taxid | taxa id number for the host species from NCBI Taxonomy Browser | 640 | 197 | 236 | 78 |
Collection timestamp | date of sampling in DD/MM/YYYY format | 1069 | 143 | 173 | 108 |
Countries | country from which samples were collected | 46 | 26 | 18 | 20 |
Latitude range (deg) | latitude in decimal degrees | -43.53 to 60.17 | -37.94 to 60.17 | -39.84 to 52.28 | -43.14 to 51.73 |
Longitude range (deg) | longitude in decimal degrees | -157.79 to 174.83 | -121.79 to 152.31 | -122.83 to 138.94 | -157.79 to 174.83 |
Elevation range (m) | GPS coordinates used to estimate elevation if not stated in study | -490 to 3955 | -3 to 3955 | 17 to 3837 | -490 to 25 |
microbial_habitat_type | internal, external, and whole organism | 3 | internal and whole organism | external | external |
internal_habitat_type | digestive-associated, oral, nasal, lung, reproductive, leaf internal, root internal, and n/a | 8 | 1 | n/a | n/a |
digestive_habitat_type | foregut, fecal, cloacal, intestine, stomach, other and n/a | 7 | 5 | n/a | n/a |
external_habitat_type | leaf surface, root surface, animal surface, gill, and n/a | 5 | n/a | 4 | 3 |
surrounding_habitat | freshwater, marine, terrestrial | 3 | freshwater,terrestrial | freshwater,terrestrial | marine |
lifestage | adult, juvenile/pupae, larvae, and infant | 4 | 4 | 3 | 2 |
sampling_month | month when the samples were collected | 12 | 12 | 12 | 12 |
trophic_diet | scaled 0=primary producers, 1=herbivore, 2=omnivore, 3=carnivore, 4=detritivore/scavenger | 5 | 5 | n/a | n/a |
preservation_method | sample storage by direct freeze, ethanol, RNA-later, or other | 4 | 4 | 3 | 2 |
extraction_method | name of DNA extraction kit | 15 | 5 | 6 | 2 |
biogeo_realm | 7 | 6 | 5 | 4 | |
Worldclim2 bioclimatic variables | http://worldclim.org/version2; Fick et al 2017 | n/a | 8 | 8 | n/a |
Marine geophysical variables | http://marspec.weebly.com/about.html; Sbrocco et al 2013 | n/a | n/a | n/a | 11 |
Immune Complexity (binary) | inferred from host class information | n/a | 2 | 2 | n/a |
Immune Complexity (ordinal) | scale based on Flajnik et al 2018; | n/a | 1-9 | 1-9 | n/a |