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Table 1 TE content in the rice (Oryza sativa ssp. japonica cv. “Nipponbare” v. MSU7) genome

From: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

 

Class

Std6.9.5*

Complete** (%)

Fragmented** (%)

Total** (%)

LTR

Class I

88.1 Mb

14.44

9.11

23.54

Non-LTR

Class I

7.6 Mb

0.51

1.52

2.03

TIR

Class II

65.5 Mb

7.93

9.56

17.49

Helitron

Class II

13.4 Mb

1.10

2.47

3.57

Total

–

174.6 Mb

23.98

22.66

46.64

  1. *Annotation based on the curated library (v6.9.5)
  2. **Percent of genome estimated based on a genome size of 374.3 Mb
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Genome Biology

ISSN: 1474-760X

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