Fig. 4
Annotation performance of DNA transposon-related programs as compared to the rice curated annotation. a General methods and c structure-based methods to identify TIR elements. The TIR-Learner_rmLTR and TIRvish_rmLTR libraries had LTR-related sequences removed using the curated library. b Structure-based methods and specialized database to identify miniature inverted transposable elements (MITEs). d Annotation performance of Helitron-related methods as compared to the rice curated annotation. The HelitronScanner_clean result had non-Helitron TE sequences removed using the curated library. Sens, sensitivity; Spec, specificity; Accu, accuracy; Prec, precision; FDR, false discovery rate; F1, F1 measure