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Fig. 3 | Genome Biology

Fig. 3

From: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline

Fig. 3

Annotation performance of retrotransposon-related programs as compared to the rice curated annotation. a Various methods to identify LTR retrotransposons. GRF-LTR_FINDER combines the terminal direct repeat search engine in GRF and the filtering engine in a modified version of LTR_FINDER for detection of LTR retrotransposons. The LTR_FINDER result was generated by the parallel version. b LTR_retriever-specific results, which were generated using LTR_retriever to process results from other programs specified in each of the names in the figure. c Non-LTR retrotransposon annotation methods. d Short interspersed nuclear element (SINE) annotation methods. Sens, sensitivity; Spec, specificity; Accu, accuracy; Prec, precision; FDR, false discovery rate; F1, F1 measure

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Genome Biology

ISSN: 1474-760X

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