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Table 2 Metagenomic samples used as positive controls

From: HOPS: automated detection and authentication of pathogen DNA in archaeological remains

IDReconstructed BacteriaSequencing readsData typeDetectedReference
10CSalmonella enterica1,017,400ShotgunHP, KA, MB, MI, SP[25]
35CSalmonella enterica986,908ShotgunHP, KA, MI, SP[25]
RK1001.C0101Yersinia pestis7,023,370ShotgunHP, KA, MI, SP[17]
GEN_72Yersinia pestis7,663,408ShotgunHP, KA, MB, SP[17]
549_OYersinia pestis1,520,471ShotgunHP, KA, MI, SP[16]
JK3031UDGYersinia pestis4,059,016Shotgun (UDG)HP, KA, MI, SP[16]
JK2370UDGYersinia pestis52,858,027Shotgun (UDG)HP, KA, MB, MI, SP[16]
RT6Yersinia pestis6,706,316Shotgun (UDG)HP, KA[18]
1343UnTal85Yersinia pestis3,462,216ShotgunHP, KA, MB, MI, SP[17]
6PostYersinia pestis2,546,695ShotgunHP, KA, MB, MI, SP[17]
KunilaIIYersinia pestis1,007,417ShotgunHP, KA, MB, MI, SP[17]
RISE00Yersinia pestis6,000,000ShotgunHP, KA, MI, SP[13]
RISE139Yersinia pestis6,000,000ShotgunHP, KA, MB, MI, SP[13]
RISE386Yersinia pestis6,000,000ShotgunHP, KA, MI, SP[13]
RISE397Yersinia pestis6,000,000ShotgunHP, KA, SP[13]
RISE505Yersinia pestis6,000,000ShotgunHP, KA, MB, MI, SP[13]
RISE509Yersinia pestis6,000,000ShotgunHP, KA, MB, MI, SP[13]
RISE511Yersinia pestis6,000,000ShotgunHP, KA, SP[13]
54Mycobacterium tuberculosis70,897ShotgunHP, KA, MI, SP[21]
58Mycobacterium tuberculosis114,555ShotgunHP, KA, MI, SP[21]
64Mycobacterium tuberculosis160,310ShotgunHP, KA, MB, MI, SP[21]
54Mycobacterium tuberculosis5,000,000Capture (UDG)HP, KA, MB, MI, SP[21]
58Mycobacterium tuberculosis5,000,000Capture (UDG)HP, KA, MB, MI, SP[21]
64Mycobacterium tuberculosis5,000,000Capture (UDG)HP, KA, MB, MI, SP[21]
P1P2Helicobacter pylori5,000,000Capture (UDG)HP, KA, MB, MI, SP[27]
  1. HP HOPS, KA KRAKEN, MB metaBIT, MI MIDAS, SP SPARSE