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Table 2 Real-world datasets for benchmarking

From: Benchmarking principal component analysis for large-scale single-cell RNA-sequencing

DatasetNo. of genesNo. of cellsNo. of cell typesPCs usedFile size (LogCPMED, CSV)File size (count, CSV)File size (count, binary)
PBMCs17,4847136PC1–345 MB24 MB2.1 MB
Pancreas17,499360514PC1–12530 MB287 MB22 MB
BrainSpinalCord25,893156,04973PC1–169.3 MB7.5 GB197 MB
Brain18,782130,612760PC1–20290 GB58 GB3.2 GB