TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

Table 5 Chinese Spring transcript alignment statistics

Transcript dataset	No. of transcripts	Assembly	Proportion of complete transcripts¹ (%)
IWGSC v1.0 transcripts [4]	269,583	TRITEX	96.2
		IWGSC [4]	97.0
		Clavijo et al. [19]	87.8
		Zimin et al. [21]	88.5
Full-length cDNAs [49]	6137	TRITEX	97.1
		IWGSC [4]	96.3
		Clavijo et al. [19]	91.6
		Zimin et al. [21]	85.4

¹Proportion of transcripts with at least one alignment with ≥ 99% coverage and ≥ 99% identity (for IWGSC transcripts) or with ≥ 90% coverage and ≥ 99% identity (for full-length cDNAs). Alignments were done with GMAP [50]

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