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Table 3 Assembly statistics for Zavitan and Chinese Spring

From: TRITEX: chromosome-scale sequence assembly of Triticeae genomes with open-source tools

 

Zavitan

Chinese Spring

TRITEX

Avni et al. [8]

TRITEX

IWGSC [4]

Unitig assembly size

10.8 Gb

 

15.1 Gb

 

Unitig N50

21.7 kb

 

21.4 kb

 

Unitig N90

1.5 kb

 

1.7 kb

 

Assembled sequence in contigs ≥ 1 kb

10.0 Gb

 

14.0 Gb

 

Assembled sequence in contigs ≥ 10 kb

7.8 Gb

 

10.8 Gb

 

Scaffold assembly size

11.1 Gb

10.5 Gb

15.7 Gb

14.5 Gb

Scaffold N50

1.3 Mb

7.0 Mb

2.3 Mb

7.0 Mb

Scaffold N90

97 kb

1.2 Mb

281 kb

1.2 Mb

Assembled sequence in scaffolds ≥ 1 kb

10.4 Gb

10.5 Gb

14.8 Gb

14.5 Gb

Assembled sequence in scaffolds ≥ 1 Mb

6.7 Gb

9.6 Gb

11.9 Gb

13.4 Gb

Unfilled internal gaps

209 Mb (1.9%)

171 Mb (1.6%)

476 Mb (3.0%)

262 Mb (1.8%)