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Fig. 3 | Genome Biology

Fig. 3

From: Systematic comparative analysis of single-nucleotide variant detection methods from single-cell RNA sequencing data

Fig. 3

The performance measurements of variant-calling tools in different genomic contexts of simulated data. a Boxplots showing the TPRs with minimal read depths ≥ 3 at inserted SNV loci in different genomic contexts. b Scatter plots showing the log-transformed FDRs with minimal read depths ≥ 3 at inserted SNV loci. The black lines represent the log-transformed median values of FDRs. c Scatter plots showing the precision and recall in different minimal read depth thresholds for high-identity regions. d Boxplots showing the F-scores with minimal read depths ≥ 3 at inserted SNV loci in different genomic contexts

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