Skip to main content

Table 2 Comparison of scSplit and demuxlet performance in demultiplexing merged three individually genotyped stromal samples (TPR true positive rate, FDR false discovery rate); Total cell numbers: 9567; Reads per cell: 14,495; Informative SNVs: 63,129; Runtime for matrices building: 67 min, Runtime for cell assignment: 55 min

From: Genotype-free demultiplexing of pooled single-cell RNA-seq

Predictions vs TruthTPRFDRCohen’s Kappa
scSplitSinglet0.940.020.95
 Doublet0.650.04 
demuxletSinglet0.930.020.77
 Doublet0.660.47