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Fig. 3 | Genome Biology

Fig. 3

From: Genotype-free demultiplexing of pooled single-cell RNA-seq

Fig. 3

Batch effect during sequencing runs found in comparison of individual runs was obvious compared to that in pooled scRNA-seq data. a UMAP for three individually sequenced samples. b UMAP for three individually sequenced and normalized samples. c UMAP for pooled sequencing of same three individual samples, samples marked based on demultiplexing results using scSplit. d UMAP for pooled sequencing of same three individual samples, normalized by total sample reads

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