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Table 2 Read mapping to confirm contamination of Klebsiella pneumoniae in a run, ERR024951, labeled as Salmonella enterica

From: Mash Screen: high-throughput sequence containment estimation for genome discovery

Organism Reads Coverage Identity Score p value
Salmonella enterica subsp. enterica serovar Typhi str. CT18 1,962,751 88.91% 98.64% 1 0
Klebsiella pneumoniae strain k1037 10,726,719 98.76% 99.96% 0.999 0
  1. Organism refers to either the labeled genome or the contaminant. Reads refers to the number of reads mapped to those genomes when both were provided as references in tandem. Coverage refers to the amount of each genome that was covered by the mapped reads. Identity refers to the average identity of the covered portions based on naive consensus from the pileups. Score and P value are results from Mash Screen
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Genome Biology

ISSN: 1474-760X

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