0
|
Basic information
|
Basic information, such as allele status, alternative allele frequency of all genomes as a whole, and variant-related links
|
Card
|
1
|
Variant browser
|
The Integrative Genomics Viewer (IGV) to visualize genomic data sets, such as human and ancient reference genomes, and conservation scores
|
IGV browser
|
2
|
Population prevalence
|
Alternative allele frequency (AAF) in worldwide populations
|
AAF distribution map; Table
|
3
|
Ancient frequency
|
Alternative allele frequency for selected variant in ancient genomes
|
AAF distribution map; Table.
|
4
|
Variant effect
|
Variant types, effects, and gene contents for selected variant
|
Table
|
5
|
Consequence prediction
|
Consequence predicted Conservation scores for selected variant
|
Table
|
6
|
Population differentiation
|
Estimation of population differentiation that measured by FST
|
Heat map plot; Table
|
7
|
Natural selection
|
Natural selection signals for selected variant and/or its surrounding region
|
Manhattan plot, Table
|
8
|
Genomic diversity
|
Genomic diversity pattern for regions near selected variant
|
Scatter plot, Table
|
9
|
Linkage disequilibrium (LD)
|
Genetic linkage pattern for regions near selected variant
|
LD decay plot; Table
|