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Table 3 Baseline methods in term-centric evaluation of protein function prediction

From: The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

 Model numberTraining dataScore assignment
Expression1Gene expression compendium for P. aeruginosa PAO1Highest correlation score out of all pairwise correlations
 2 Top 10 average correlation score
BLAST1All experimental annotation in UniProt-GOA. Sequences from Swiss-ProtHighest sequence identity out of all pairwise BLASTp hits
 2All experimental annotation in UniProt-GOA. Sequences from Swiss-Prot and TrEMBL 
blastcomp1All experimental and computational annotations in UniProt-GOA. Sequences from Swiss-Prot 
 2All experimental and computational annotations in UniProt-GOA. Sequences from Swiss-Prot and TrEMBL