Table 2 Summary of the ten most variable genes in the Arabidopsis pan-genome. “Number of variants” is the total number of variants intersecting a given gene, and “Normalized number of variants” is the number of intersecting variants divided by gene length
From: RaGOO: fast and accurate reference-guided scaffolding of draft genomes
Gene | Annotation | Number of variants | Normalized number of variants | Number of accessions with variants |
|---|---|---|---|---|
AT4G16960 | Defense response, chloroplast | 62 | 0.00715605 | 80 |
AT1G58602 | ADP binding, defense response, ATP binding | 57 | 0.00244101 | 90 |
AT3G44400 | ADP binding, defense response, cytoplasm, signal transduction | 56 | 0.00621256 | 89 |
AT3G44630 | Defense response | 55 | 0.00593312 | 84 |
AT4G16920 | Defense response, chloroplast, cytoplasm | 55 | 0.00522913 | 79 |
AT1G62620 | N,N-dimethylaniline monooxygenase activity, flavin adenine dinucleotide binding, NADP binding, monooxygenase activity, nucleus, oxidation-reduction process | 54 | 0.00850796 | 91 |
AT4G16950 | Defense response to fungus, incompatible interaction, nucleotide binding, defense response, protein binding | 54 | 0.00558486 | 70 |
AT1G62630 | Defense response, ATP binding, N-terminal protein myristoylation, ADP binding, nucleus | 50 | 0.00748391 | 93 |
AT5G41740 | Nucleus, defense response, chloroplast | 48 | 0.00565171 | 91 |
AT4G16890 | Defense response, cytosol, signal transduction, defense response to bacterium, protein binding, ATP binding, defense response to bacterium, incompatible interaction, ADP binding, systemic acquired resistance, salicylic acid-mediated signaling pathway, cytoplasm, intracellular membrane-bounded organelle, nucleus, nucleotide binding, endoplasmic reticulum, response to auxin | 48 | 0.00536373 | 75 |