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Fig. 8 | Genome Biology

Fig. 8

From: SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

Fig. 8

SEAPTH template computational pipeline. The top-performing pipelines from this benchmark are provided as a template for users to adjust according to their own job scheduling systems and resource availability. SEPATH provides two main pathways: a bacterial pipeline using mOTUs2 classifications on raw sequencing reads and a bacterial and viral pipeline employing Kraken on metagenomic contigs assembled using non-human reads with MetaSPAdes

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