Skip to main content

Advertisement

Fig. 5 | Genome Biology

Fig. 5

From: SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

Fig. 5

Kraken performance on a single dataset containing both bacterial (a) and viral (b) reads. Performance from metagenomic assembly approach is shown on both unfiltered contigs and results filtered by a minimum of 5 contigs required for classification. Kraken performance on raw reads is shown both unfiltered and filtered by a minimum of 100 reads for classification. Bacterial performance is classified at genus level whereas viral performance is regarding species level due to peculiarities in taxonomy

Back to article page