From: Birth, expansion, and death of VCY-containing palindromes on the human Y chromosome
Cell line | VCY CN | Hg | Rearrangement summary | Novel junction structure | Data types | Similar samples | Possible mechanisms |
---|---|---|---|---|---|---|---|
HG00742 | 1 | R1b-L11 | 37.8-kb deletion removing one P8 arm | 14-bp insertion | Fiber-FISH 10x | NHEJ | |
HG01781 | 3 | J2a-M410 | 31.5-kb inverted duplication expanding P8 to 113.8 kb | Recombination within 92-bp duplicated region | Fiber-FISH 10x | HG01991 | NAHR or BIR |
HG02390 | 3 | O2-K18 | 191.3-kb tandem duplication distal to P8 | Recombination within 2-bp microhomology region | Fiber-FISH 10x | HG01031, HG02401, HG00982 | MMBIR |
HG01377 | 4 | E1b-M35 | Complex formation of additional 436.7-kb new palindrome | Recombination within 5-bp microhomology region | Fiber-FISH 10x | MMBIR | |
HG01097 | 3 | G-M201 | 158.1-kb tandem duplication distal to P8 | Recombination within 6-bp microhomology region | Fiber-FISH 10x | MMBIR | |
HG04131 | 3 | R1a-Z93 | 70.1-kb tandem duplication distal to P8 | Complex recombination within 5.1-kb duplicated region | Fiber-FISH 10x | NAHR or BIR | |
NA18953 | 3 | O2b-M176 | 60.5-kb tandem duplication proximal to P8 | Recombination within 5.1-kb duplicated region | Fiber-FISH 10x | NAHR or BIR | |
HG00707* | 3 | O3-M122 | 60.5-kb tandem duplication proximal to P8 | – | Fiber-FISH | – |