|
GROOT [25]
|
Variant detection in metagenomes
|
MinHash (KHF)
|
|
mashtree [26]
|
Phylogenetic tree construction
|
MinHash (KMV)
|
|
MashMap [27]
|
Long read alignment
|
Minimizer/MinHash (KMV)
|
|
MASH [1]
|
Sequence analysis
|
MinHash (KMV)
|
|
sourmash [22]
|
Sequence analysis
|
MinHash (KMV)
|
|
finch [23]
|
Sequence analysis
|
MinHash (KMV)
|
|
MiniMap2 [28]
|
Read alignment
|
Minimizer
|
|
ABySS [29]
|
Genome assembly
|
Bloom filter
|
|
Lighter [30]
|
Sequencing error correction
|
Bloom filter
|
|
BIGSI [31]
|
Sequence index and search
|
Bloom filter
|
|
khmer [32]
|
Sequence analysis
|
Count-Min sketch
|
|
FastEtch [33]
|
Genome assembly
|
Count-Min sketch
|
|
dashing [2]
|
Sequence analysis
|
HyperLogLog
|
|
krakenUniq [34]
|
Metagenome classification
|
HyperLogLog
|
|
HULK [4]
|
Sequence analysis
|
Histosketch
|
|
ntCard [35]
|
Sequence analysis
|
ntCard
|
|
BBsketch [24]
|
Sequence analysis
|
MinHash
|
|
MHAP [21]
|
Genome assembly
|
MinHash
|
|
MC-MinH [20]
|
Sequence clustering
|
MinHash
|
|
KmerGenie [36]
|
Sequence analysis
|
Count-Min sketch variant
|
|
Squeakr [37]
|
Sequence analysis
|
Counting Quotient Filter
|
|
Mantis [38]
|
Sequence index and search
|
Counting Quotient Filter
|
|
kssd [39]
|
Sequence analysis
|
K-mer Substring Space Decomposition
|
