From: MetaCarvel: linking assembly graph motifs to biological variants
Dataset | Method | Number of scaffolds | Assembly size (Mbp) | Misassemblies | Largest scaffold (kbp) | Scaffolds > 50 kbp | Length at 1 Mbp (kbp) | Length at 10 Mbp (kbp) | Length at 50 Mbp (kbp) |
---|---|---|---|---|---|---|---|---|---|
MBARC-26 | MEGAHIT + OPERA-LG | 22,597 | 87.5 | 207 | 473.2 | 180 | 319.2 | 97.0 | 2.3 |
MEGAHIT + MetaCarvel | 19,879 | 88.0 | 99 | 287.3 | 177 | 287.3 | 154.3 | 9.1 | |
metaSPAdes + OPERA-LG | 4931 | 98.7 | 148 | 2331.2 | 412 | 2055.2 | 944.0 | 177.1 | |
metaSPAdes + MetaCarvel | 5137 | 99.8 | 68 | 199.1 | 298 | 1810.2 | 1125.0 | 199.4 | |
metaSPAdes scaffolds | 5333 | 98.3 | 55 | 199.1 | 410 | 1810.2 | 925.6 | 158.3 | |
CAMI medium | MEGAHIT + OPERA-LG | 157,389 | 271.7 | 1669 | 854.1 | 527 | 825.4 | 404.6 | 73.1 |
MEGAHIT + MetaCarvel | 158,340 | 271.5 | 1793 | 854.1 | 520 | 825.4 | 418.2 | 74.5 | |
CAMI high | MEGAHIT + OPERA-LG | 1,188,757 | 1121.8 | 23,224 | 613.6 | 824 | 581.5 | 299.8 | 96.6 |
MEGAHIT + MetaCarvel | 1,185,065 | 1121.2 | 22,401 | 1089.6 | 847 | 613.6 | 304.5 | 101.8 |