From: MetaCarvel: linking assembly graph motifs to biological variants
Dataset | Method | True repeats | Predicted repeats | True positives | False positives | True negatives | False negatives | Precision (%) | Recall (%) |
---|---|---|---|---|---|---|---|---|---|
Yersinia pestis | OPERA-LG | 46 | 353 | 31 | 322 | 904 | 15 | 9.06 | 67.39 |
MetaCarvel | 46 | 222 | 33 | 189 | 1037 | 13 | 14.86 | 71.73 | |
MBARC-26 | OPERA-LG | 532 | 771 | 356 | 415 | 21,215 | 176 | 47.34 | 66.91 |
MetaCarvel | 532 | 454 | 438 | 16 | 21,614 | 94 | 96.47 | 85.33 | |
CAMI (M) | OPERA-LG | 3809 | 4568 | 2989 | 1579 | 154,936 | 820 | 65.43 | 78.74 |
MetaCarvel | 3809 | 4301 | 3317 | 984 | 155,531 | 492 | 77.12 | 87.08 | |
CAMI (H) | OPERA-LG | 12,666 | 27,625 | 7078 | 20,547 | 1,157,503 | 5558 | 25.62 | 56.01 |
MetaCarvel | 12,666 | 9219 | 7266 | 1953 | 1,176,067 | 5400 | 78.81 | 57.36 |