Fig. 2

The Ranks and p values of target pathways derived by 13 methods. We perform each method on 75 human benchmark data sets. The resulting ranks and p values of target pathways are plotted in violin plots. The horizontal axis shows the pathway analysis methods in both subfigures. The vertical axis in a represents the ranks while the vertical axis in b corresponds to p values of the target pathways. Hereafter, the labels of non-TB and TB methods are written in blue and red, respectively