Fig. 6

Assembled Prevotella and Campylobacter genomes show diarrhea-related trends. a Prevotella core genome phylogram built on the alignment of all protein coding genes common to all members of the tree (15 assembled genomes, 3 isolate genomes, 4 previously publish metagenomic assembled genomes) with exception of the out-group Bacteroides fragilis. Five genomes were placed in the diarrhea-associated Prevotella group due to their distance from other assembled genomes. b Percentage of metagenomic reads that align to the five diarrhea-associated Prevotella genomes; each point represents an individual sample; mean and standard error of the mean are shown (one-way ANOVA p < 0.001, with Holm-Sidak’s multiple comparison test, **p < 0.01, ***p < 0.001). c Campylobacter core genome phylogram built on the alignment of all protein coding genes common to all members of the tree (3 assembled genomes, 4 human isolate genomes, 4 rhesus macaque clinical isolate genomes) with exception of the outgroup H. macacae. d Percentage of metagenomic reads that align to assembled Campylobacter genomes for both asymptomatic monkeys and those that had diarrhea; each point represents an individual sample; mean and standard error of the mean are shown (one-way ANOVA p < 0.001, with Holm-Sidak’s multiple comparison test, **p < 0.01, ***p < 0.001)