Fig. 3

Age-related changes in taxa in the rhesus macaque gut microbiome. a Phyla plot organized by host age. All phyla below 1% average abundance grouped into “Other”. Bars represent the average for the indicated time point. b Line graph indicating longitudinal changes in the relative abundance of the Actinobacteria and Spirochetes phyla in infant macaque gut microbiome (two-way ANOVA p < 0.0001, Bonferroni multiple comparison test *p < 0.05, ***p < 0.001). c Density plot of 12 abundant taxa to illustrate host age-dependent phylogenetic shifts