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Fig. 3 | Genome Biology

Fig. 3

From: Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center

Fig. 3

E. cloacae isolates from CUH within the global population structure. a Phylogenetic tree reconstruction from the core gene alignment highlights the diversity encountered in routine hospital samples. The inner and middle rings show the same clustering information at 0.05 and 0.015, respectively. The outer ring displays which samples are derived from this study, embedded in the global diversity [11]. Accession numbers and cluster annotation are given in Additional file 2: Tables S2 and S5 for the global collection and the samples from this study, respectively. b Barplot illustrating the numbers of the different lineages observed in our collection compared to the global collection [11]

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