Table 1 Summary of different feature selection techniques used by reference-free deconvolution methods in published studies
From: TOAST: improving reference-free cell composition estimation by cross-cell type differential analysis
Features selected by | RF methods | Published studies |
|---|---|---|
Deconf | Liebner et al. [40] | |
RefFreeEWAS | Johnson et al. [9] | |
RefFreeEWAS | Johnson et al. [10] | |
Largest variability | RefFreeEWAS | Chen et al. [11] |
RefFreeEWAS | Everson et al. [41] | |
ReFACTor | Kaushal et al. [42] | |
ReFACTor | Rahmani et al. [23] | |
NMF | Feng et al. [32] | |
External information | Deconf | Gaujoux et al. [43] |
RefFreeEWAS | Gasparoni et al. [44] |