Fig. 6
From: A systematic assessment of current genome-scale metabolic reconstruction tools
Overlap of reactions in draft reconstructions for Bordetella pertussis with those in the manually curated model. In total, 27 networks were reconstructed with 7 tools (CarveMe: C, MetaDraft: D, AuReMe: A, Pathway Tools: P, ModelSEED: S, RAVEN: R, Merlin: E). Several reconstructions, which are represented with different sub-indices, were generated for each tool using different parameters settings. Numbers inside bars represent percentages with respect to the corrected number of reactions in iBP1870, which is the total number of reactions minus the biomass-related reactions (light green). We observed a wide variation in the coverage (blue bars) and the percentage of additional reactions (yellow bars). In addition, a considerable number of reactions in the networks build with MODELSEED, RAVEN (KEGG), and Merlin contained different stoichiometry for protons than those in iBP1870 (draft green bars)