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Fig. 3 | Genome Biology

Fig. 3

From: Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters

Fig. 3

Aux 5 clusters have an atypical gene organization and encode predicted lipases. a The novel Aux 5 cluster sequences from the four distinct genomic loci were aligned. The atypical Aux cluster organization is observed in all four Aux 5 clusters. Numbers at the beginning of the clusters represent the genomic position on the BGT49 chromosome. b The structure of TleV1 was predicted using the Phyre2 webserver. The Pseudomonas aeruginosa Tle1 crystal structure is predicted with high confidence to be homologous to the Aux 5 putative effector. The color scheme depicts the alignment confidence of the Phyre2 model to the Tle1 crystal structure. The image was obtained using JSmol. c Aux 5-like clusters were identified in other V. cholerae strains and an Aeromonas strain and analyzed phylogenetically

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