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Table 2 Experiments performed for comparing BERMUDA with existing methods

From: BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Dataset Batch Experiment name Cell type removed
2D Gaussian Batch1, Batch2 Experiment all NA
Experiment removal1 Type1 from Batch1
Experiment removal2 Type1 from Batch1,
Type4 from Batch2
Splatter Batch1, Batch2 Experiment all NA
Experiment removal1 Type1 from Batch1
Experiment removal2 Type1 from Batch1,
Type4 from Batch2
Pancreas Muraro batch, Baron batch Experiment all NA
Experiment removal alpha and beta from Baron batch
Muraro batch,
Baron batch,
Segerstolpe batch
Experiment all NA
Experiment removal alpha and beta from Baron batch,
alpha and beta from Segerstolpe batch
PBMC PBMC batch,
pan T cell batch
NA NA