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Table 2 Experiments performed for comparing BERMUDA with existing methods

From: BERMUDA: a novel deep transfer learning method for single-cell RNA sequencing batch correction reveals hidden high-resolution cellular subtypes

Dataset

Batch

Experiment name

Cell type removed

2D Gaussian

Batch1, Batch2

Experiment all

NA

Experiment removal1

Type1 from Batch1

Experiment removal2

Type1 from Batch1,

Type4 from Batch2

Splatter

Batch1, Batch2

Experiment all

NA

Experiment removal1

Type1 from Batch1

Experiment removal2

Type1 from Batch1,

Type4 from Batch2

Pancreas

Muraro batch, Baron batch

Experiment all

NA

Experiment removal

alpha and beta from Baron batch

Muraro batch,

Baron batch,

Segerstolpe batch

Experiment all

NA

Experiment removal

alpha and beta from Baron batch,

alpha and beta from Segerstolpe batch

PBMC

PBMC batch,

pan T cell batch

NA

NA