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Table 2 Assembly bin taxonomic assignment and gene content

From: Assignment of virus and antimicrobial resistance genes to microbial hosts in a complex microbial community by combined long-read assembly and proximity ligation

    Assembled sequence taxonomic affiliation (kbp)1
Assembly Bin set Avg # complete ORFs per contig2 Archaea Bacteria Eukaryota Viruses No-hits
Illumina Unbinned 1.31 46,405 3,419,539 125,885 6287 1,019,041
MQ 3.39 4543 393,630 3906 71 14,113
HQ 7.66 1056 75,467 575 4 523
PacBio Unbinned 14.6 10,686 854,468 7707 2290 26,804
MQ 20.8 885 149,168 811 50 501
HQ 48.2 1809 20,711 512 0 17
  1. 1superkingdom taxonomic affiliation was based on contig-level assignments derived from the BlobTools/DIAMOND workflow
  2. 2Complete ORFs were defined as Prodigal predictions that had a “partial” status of “00,” which indicates the presence of a start and stop codon for the ORF