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Fig. 3 | Genome Biology

Fig. 3

From: RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts

Fig. 3

Benchmarking results of RaPID, GERMLINE, and RefinedIBD in a genotyping platform. The simulated sequences with a chromosome length of 10 Mbps were thinned by choosing the variant site with the highest minor allele frequency in every 80 variant sites. a Run time for RaPID, GERMLINE, and RefinedIBD with the increasing number of haplotypes from 5000 to 30,000. The target length for RaPID was set to 3 cM. b Power. c Accuracy. d Length discrepancy of RaPID, GERMLINE, and RefinedIBD using 4000 haplotypes. Accuracy, power, and length discrepancy are defined in the caption of Fig. 2. Parameters of GERMLINE and RefinedIBD were tuned with due diligence and according to previous literature (see the “Benchmarking using simulated data” section) but may not be fully optimized

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