Table 2 Validation of fully unaligned sequences by aligning to other existing human sequences (>= 90% identity). The last line showed the length of sequences unaligned to any of existing genomes
From: HUPAN: a pan-genome analysis pipeline for human genomes
Assembled genomes | Alignment (bp) | Partially unaligned (bp) | Fully unaligned (bp) |
|---|---|---|---|
ALT | 9,383,032 | 2,641,297 | 18,693,461 |
HuRef | 17,031,675 | 5,138,981 | 8,547,134 |
WGSA | 13,261,237 | 5,836,552 | 11,620,001 |
YH | 24,099,632 | 2,330,394 | 4,287,764 |
KOREF | 24,374,934 | 2,012,184 | 4,330,672 |
HX1 | 14,797,305 | 2,748,577 | 13,171,908 |
GM12878 | 8,635,247 | 4,473,988 | 17,608,555 |
No alignment | 646,233 | ||