Table 1 Comparing of HUPAN and EUPAN in the procedure of extracting non-reference sequences of an individual genome
From: HUPAN: a pan-genome analysis pipeline for human genomes
| Â | HUPAN | EUPAN |
|---|---|---|
# raw contigs (> 500 bp) | 610,537 | 610,537 |
raw contigs length (bp) | 2,709,735,693 | 2,709,735,693 |
# contigs after filtering | 24,150 | – |
contigs length after filtering (bp) | 76,168,613 | – |
# misassemblies | 1037 | 1050 |
Misassembled contigs length (bp) | 5,483,408 | 5,657,999 |
# Fully unaligned contigs | 5371 | 5394 |
Fully unaligned contigs length (bp) | 5,000,779 | 5,014,971 |
# Partially unaligned contigs | 1187 | 1197 |
Partially unaligned contigs length (bp) | 5,435,999 | 5,628,509 |
CPU time (hours) | 42 | 275 |
Maximum memory (Gb) | 92 | 250 |