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Table 1 Distribution of candidate novel variants across different regions of interest

From: Haplotype-aware diplotyping from noisy long reads

  All variants Novel variant candidates
Total 2,923,556 14,118
Gencode v27 (ALL) 1,483,947 5,093
Gencode v27 exome 92,268 321
Repeat Masker 1,592,193 9,954
LINEs 687,989 4,808
SINEs 335,181 953
Segmental duplications 161,588 4,838
Tandem repeats 104,753 5,944
Centromeres 1,037 28
Telomeres 0 0
  1. All variants refers to the variants in the Long Read Variants set, and Novel Variant Candidates are those described in “Candidate novel variants” section