Skip to main content
Fig. 3 | Genome Biology

Fig. 3

From: ChiCMaxima: a robust and simple pipeline for detection and visualization of chromatin looping in Capture Hi-C

Fig. 3

Comparison of ChiCMaxima, CHiCAGO, and GOTHiC on mES CHi-C data. a Venn diagrams showing numbers of interactions called by the three different methods which are conserved with the other methods. b Box plots comparing the CHiCAGO (left) or GOTHiC (center and right) metric scores of interaction strength for the sets of interactions called by CHiCAGO (left) or GOTHiC (center and right) which are conserved with those called by ChiCMaxima (left and center) or CHiCAGO (right), versus those which are not. ***P < 2 × 10−16; Wilcoxon rank sum test. c Bar charts showing fold enrichment over genomic background for different ChIP-seq peaks within the promoter-interacting sequences determined by the different CHi-C analysis methods

Back to article page