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Table 2 Candidate gene categories with the keywords and identifiers used to select them from the full sets of sequences annotated with InterProScan. To be included as candidate orthologous groups (OGs) in the category, OGs were required to have at least one sequence matching both a UniRef and an InterProScan entry, and an additional gene ontology term in the case of serine proteases

From: Genomic signatures accompanying the dietary shift to phytophagy in polyphagan beetles

Gene family category

InterProScan (Pfam or InterPro identifiers) or Gene Ontology

UnifRef keyword

Number of OGs

UDP-glycosyltransferases (UGTs)

PF00201

name:“cluster UDP glucuronosyltransferase” OR name:“cluster UDP glycosyltransferase”

4

Cytochrome P450 oxidases (P450s)

PF00067

name:“cluster Cytochrome P450”

22

Carboxylesterases (CEs)

PF02230, PF00135

name:“cluster carboxylesterase” OR name:“carboxylic ester hydrolase”

19

Glutathione S-transferases (GSTs)

PF00043, PF02798

name:“cluster Glutathione S-transferase”

6

Serine proteases (SERs)

PF00450, PF12146, PF05577, GO:0008236

name:“cluster Serine protease” OR name:“cluster Serine peptidase”

4

Cysteine proteases (CYSs)

PF00112

name:“cluster cysteine protease” OR name:“cluster cystein protease” OR name:“cluster Papain”

7

ABC transporters (ABCs)

PPF00005, PF00664

name:“cluster ABC”

28

Glycoside hydrolases (GHs)

IPR000334, IPR000743, IPR001360, IPR001547

name:“cluster Glycoside hydrolase”

1

Total

91