Table 1 Beetle genomes and transcriptomes included in the study. Taxonomic classifications are listed with data sources, as well as completeness (Benchmarking Universal Single-Copy Ortholog, BUSCO, score, C = complete, S = complete single-copy, D = complete duplicated, F = fragmented, M = missing), number of predicted proteins, and number of orthologous groups (OGs) with genes from each species. The outgroup species used in the phylogeny, Stylops melittae, belongs to the order Strepsiptera, which is the sister group of Coleoptera [33]

Cicindela hybrida

CHYBR

Adephaga

Carabidae

Transcriptome

GDMH01000000

PRJNA286505

1KITE, this study

C: 90.4 [S: 84.9%, D: 5.5%], F: 3.4%, M: 6.2%

Calosoma frigidum

CFRIG

Adephaga

Carabidae

Transcriptome

GDLF01000000

PRJNA286499

1KITE, this study

C: 78.3% [S: 73.5%, D: 4.8%], F: 9.8%, M: 11.9%

Elaphrus aureus

EAURE

Adephaga

Carabidae

Transcriptome

GDPI01000000

PRJNA286520

1KITE, this study

C: 92.4% [S: 85.9%, D: 6.5%], F:2.2%, M: 5.4%

Noterus clavicornis

NCLAV

Adephaga

Noteridae

Transcriptome

GDNA01000000

PRJNA286561

1KITE, Vasilikopoulos et al. [34]

C: 90.9% [S: 84.1%, D: 6.8%], F: 4.4%, M: 4.7%

Haliplus fluviatilis

HFLUV

Adephaga

Haliplidae

Transcriptome

GDMW01000000

PRJNA286525

1KITE, Vasilikopoulos et al. [34]

C: 91.8% [S: 76.3%, D: 15.5%], F: 4.3%, M: 3.9%

Cybister lateralimarginalis

CLATE

Adephaga

Dytiscidae

Transcriptome

GDLH01000000

PRJNA286512

1KITE, Vasilikopoulos et al. [34]

C: 88.2% [S: 83.1%, D: 5.1%], F: 3.7%, M:8.1%

Sinaspidytes wrasei

SWRAS

Adephaga

Aspidytidae

Transcriptome

GDNH01000000

PRJNA286492

1KITE, Vasilikopoulos et al. [34]

C: 87.0% [S: 76.7%, D: 10.3%], F: 4.0%, M: 9.0%

Dineutus sp.

DINEU

Adephaga

Gyrinidae

Transcriptome

GDNB01000000

PRJNA286516

1KITE, Vasilikopoulos et al. [34]

C: 71.9% [S: 51.6%, D: 20.3%], F: 13.6%, M: 14.5%

Gyrinus marinus

GMARI

Adephaga

Gyrinidae

Transcriptome

GAUY01000000

PRJNA219564

1KITE, Misof et al. [35]

C: 81.5% [S: 79.0%, D: 2.5%], F: 8.1%, M: 10.4%

Aleochara curtula

ACURT

Polyphaga

Staphylinidae

Transcriptome

GATW01000000

PRJNA219522

1KITE, Misof et al. [35]

C: 91.4% [S: 87.5%, D: 3.9%], F: 4.0%, M: 4.6%

Anoplophora glabripennis

AGLAB

Polyphaga

Cerambycidae

Genome

GCF_000390285

PRJNA167479

I5k, McKenna et al. [21]

C: 96.9% [S: 95.8%, D: 1.1%], F: 2.7%, M: 0.4%

Agrilus planipennis

APLAN

Polyphaga

Buprestidae

Genome

GCF_000699045

PRJNA230921

I5k, unpublished

C: 92.5% [S: 91.2%, D: 1.3%], F: 4.5%, M: 3.0%

Dendroctonus ponderosae

DPOND

Polyphaga

Curculionidae

Genome

GCF_000355655

PRJNA162621

Keeling et al. [36]

C: 91.2% [S: 86.0%, D: 5.2%], F: 4.1%, M: 4.7%

Leptinotarsa decemlineata

LDECE

Polyphaga

Chrysomelidae

Genome

GCF_000500325

PRJNA171749

I5k, Schoville et al. [37]

C: 88.9% [S: 87.5%, D: 1.4%], F: 9.9%, M: 1.2%

Laparocerus tessellatus

LTESS

Polyphaga

Curculionidae

Transcriptome

10.5281/zenodo.1336288

N/A

This study, Seppey et al. [38]

C: 93.8% [S: 91.9%, D: 1.9%], F: 1.4%, M: 4.8%

Meloe violaceus

MVIOL

Polyphaga

Meloidae

Transcriptome

GATA01000000

PRNJA219578

1KITE, Misof et al. [35]

C: 90.3% [S: 85.6%, D: 4.7%], F: 5.9%, M: 3.8%

Onthophagus taurus

OTAUR

Polyphaga

Scarabaeidae

Genome

GCF_000648695

PRJNA167478

I5k, unpublished

C: 96.2% [S: 93.9%, D: 2.3%], F: 2.5%, M: 1.3%

Tribolium castaneum

TCAST

Polyphaga

Tenebrionidae

Genome

GCF_000002335

PRJNA12540

Richards et al. [39]

C: 97.0% [S: 96.5%, D: 0.5%], F: 1.6%, M:1.4%

Stylops melittae

SMELI

Outgroup

Stylopidae

Transcriptome

GAZM02000000

PRNJA219603

1KITE, Misof et al. [35]

C: 76.5% [S: 55.0%, D: 21.5%], F: 7.1%, M: 16.4%