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Table 2 QTLs identified for CO frequency. Detailing for the QTL analysis; the population under analysis, phenotype, cross type and generation, chromosome, position (cM), logarithm of odds (LOD) score, % variation explained, additive effect, flanking markers including QTL region length and gene number, top marker from QTL scan and annotation of identified candidate genes in the region

From: Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency

Population/phenotype Cross BC.gen F.gen Chr Pos cM LOD %var Add eff Flanking markers Top marker Candidate genes plus annotation Parent with increasing effect
CSxP
CO-Phenotype
RIself NA NA 6A 11.84 3.637 6.037 − 4.502 AX-95155001
AX-94507146
6,740,223-21,438,976 bp
TraesCS6A01G013800-TraesCS6A01G040900 (including 267 genes)
AX-94901219 11.84 cM
6D: 13,554,815 bp; TraesCS6D01G032100; Pre-mRNA-processing protein 40A
Marker at 11.84 cM on 6A: 14,609,435 bp
TraesCS6A01G026300.2 Holliday junction ATP-dependent DNA helicase RuvB (13,063,092 bp)
TraesCS6A01G037500.1 Holliday junction ATP-dependent DNA helicase RuvA (18,534,777 bp)
Chinese Spring
CSxP
GC-Phenotype
RIself NA NA 2A 161 2.513 4.212 − 14.73 AX-94616756
AX-94639168
51,940,072-70,183,206 bp
TraesCS2A01G098600-TraesCS2A01G119800
(including 207 genes)
AX-94419084
57,999,746 bp
TraesCS2A01G103300 (56,942,731 bp)
ATP-dependent RNA helicase DeaD; DNA helicase, ATP-dependent, RecQ type
Chinese Spring
PxCIM47
GC-Phenotype
RIself 0 5 2B 0 6.041 6.623 0.519 AX-94768203
AX-9454604547,425,660-64,988,255 bpTraesCS2B01G084900-
TraesCS2B01G104200
(including 189 genes)
AX-9476820364,988,255 bp TraesCS2B01G103300 (64,091,671 bp)
ATP-dependent DNA helicase PIF2
CIM47
PxWat94
GC-Phenotype
RIself 0 4 4B 191 2.591 10.461 − 0.838 AX-94840592
AX-95186017
3,513,381-4,996,179 bp
TraesCS4B01G005000-TraesCS4B01G007500
(including 26 genes)
AX-94840592
4,996,179 bp
TraesCS4B01G006700 Protein HIRA (4,526,708 bp) Paragon
PxBaj
GC-Phenotype
RIself 0 4 5A 304.6 3.802 9.898 1.24 AX-95240942
AX-94480416464,478,676-487,684,559 bp
TraesCS5A01G249800-TraesCS5A01G277700
(including 273 genes)
AX-94758045472,344,060 bp TraesCS5A01G257000 (472,343,789-472,347,557 bp)
WPP domain-interacting protein 1
TraesCS5A01G260500 (474,537,170 bp) Regulator of chromosome condensation (RCC1)
TraesCS5A01G381700LC (472,221,190-472,221,614 bp)
BURP domain protein RD22-similar to C-PH1 for homologous chromosome pairing
Baj