Population/phenotype | Cross | BC.gen | F.gen | Chr | Pos cM | LOD | %var | Add eff | Flanking markers | Top marker | Candidate genes plus annotation | Parent with increasing effect |
---|---|---|---|---|---|---|---|---|---|---|---|---|
CSxP CO-Phenotype | RIself | NA | NA | 6A | 11.84 | 3.637 | 6.037 | − 4.502 | AX-95155001 AX-94507146 6,740,223-21,438,976 bp TraesCS6A01G013800-TraesCS6A01G040900 (including 267 genes) | AX-94901219 11.84 cM 6D: 13,554,815 bp; TraesCS6D01G032100; Pre-mRNA-processing protein 40A Marker at 11.84 cM on 6A: 14,609,435 bp | TraesCS6A01G026300.2 Holliday junction ATP-dependent DNA helicase RuvB (13,063,092 bp) TraesCS6A01G037500.1 Holliday junction ATP-dependent DNA helicase RuvA (18,534,777 bp) | Chinese Spring |
CSxP GC-Phenotype | RIself | NA | NA | 2A | 161 | 2.513 | 4.212 | − 14.73 | AX-94616756 AX-94639168 51,940,072-70,183,206 bp TraesCS2A01G098600-TraesCS2A01G119800 (including 207 genes) | AX-94419084 57,999,746 bp | TraesCS2A01G103300 (56,942,731 bp) ATP-dependent RNA helicase DeaD; DNA helicase, ATP-dependent, RecQ type | Chinese Spring |
PxCIM47 GC-Phenotype | RIself | 0 | 5 | 2B | 0 | 6.041 | 6.623 | 0.519 | AX-94768203 AX-9454604547,425,660-64,988,255 bpTraesCS2B01G084900- TraesCS2B01G104200 (including 189 genes) | AX-9476820364,988,255 bp | TraesCS2B01G103300 (64,091,671 bp) ATP-dependent DNA helicase PIF2 | CIM47 |
PxWat94 GC-Phenotype | RIself | 0 | 4 | 4B | 191 | 2.591 | 10.461 | − 0.838 | AX-94840592 AX-95186017 3,513,381-4,996,179 bp TraesCS4B01G005000-TraesCS4B01G007500 (including 26 genes) | AX-94840592 4,996,179 bp | TraesCS4B01G006700 Protein HIRA (4,526,708 bp) | Paragon |
PxBaj GC-Phenotype | RIself | 0 | 4 | 5A | 304.6 | 3.802 | 9.898 | 1.24 | AX-95240942 AX-94480416464,478,676-487,684,559 bp TraesCS5A01G249800-TraesCS5A01G277700 (including 273 genes) | AX-94758045472,344,060 bp | TraesCS5A01G257000 (472,343,789-472,347,557 bp) WPP domain-interacting protein 1 TraesCS5A01G260500 (474,537,170 bp) Regulator of chromosome condensation (RCC1) TraesCS5A01G381700LC (472,221,190-472,221,614 bp) BURP domain protein RD22-similar to C-PH1 for homologous chromosome pairing | Baj |