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Table 2 Dataset information

From: Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads

Name Type Sequencer Individual ID Accession number Bases Reads Average length Median
rel3 Human genome MinION NA12878 * 91,240,120,433 14,183,584 6432.8 4617.0
SRR3197748 Human genome RSII NA12878 SRR3197748 176,931,641,323 40,820,704 4334.4 3053.0
ERR2585112-5 Human genome PromethION NA19240 ERR2585112-5 185,056,318,464 13,134,890 14,088.9 12,551.0
BAFME Human genome Sequel Private Private 44,835,599,221 6,174,384 7261.6 6324.0
CAA-15 Plasmid MinION DRR140497 3,312,623 726 4562.8 4689.5
CAA-109 Plasmid MinION DRR140498 2,861,064 597 4792.4 4962.0
GGGGCC-52 Plasmid MinION DRR140499 228,298,911 50,884 4486.7 4439.0
GGGGCC-21 Plasmid MinION DRR140500 305,112,100 71,016 4296.4 4600.0
CAG-6 Plasmid MinION DRR140501 170,853,052 59,808 2856.7 2935.0
CAG-18 Plasmid MinION DRR140502 177,739,795 31,644 5616.9 5887.0
CAG-30 Plasmid MinION DRR140503 420,957,360 142,000 2964.5 2999.0
CAG-30-DraIII Plasmid MinION DRR140504 104,545,063 33,551 3116.0 3026.0
CAG-70 Plasmid MinION DRR140505 64,609,201 18,232 3543.7 3091.5
CAG-130 Plasmid MinION DRR140506 10,215,540 2135 4784.8 5002.0
CCTG-45 Plasmid MinION DRR140507 3,675,433 875 4200.5 4605.0
SCA10-subjectA Plasmid RSII SRR2080459 92,385,186 81,623 1131.9 642.0
SCA10-subjectB Plasmid RSII SRR2081063 303,000,762 81,740 3706.9 2605.0
SCA10-subjectC- Plasmid RSII SRR2082412 157,578,422 81,741 1927.8 893.0
SCA10-subjectC- Plasmid RSII SRR2082428 611,539,771 163,476 3740.9 1834.0
AR-chimera rel3-plasmid MinION 869,853 41 21,215.9 13,224.0
HTT-chimera rel3-plasmid MinION 518,235 40 12,955.9 7462.5
CACNA1A-chimera rel3-plasmid MinION 387,962 35 11,084.6 9411.0
C9orf72-chimera rel3-plasmid MinION 330,265 26 12,702.5 9054.5
ATXN2-chimera rel3-plasmid MinION 627,855 40 15,696.4 8155.0
ATXN3-chimera rel3-plasmid MinION 465,481 30 15,516.0 14,225.0
ATXN7-chimera rel3-plasmid MinION 795,136 48 16,565.3 9921.5
ATN1-chimera rel3-plasmid MinION 374,363 38 9851.7 8863.0
PPP2R2B-chimera rel3-plasmid MinION 334,450 21 15,926.2 8899.0
CNBP-chimera rel3-plasmid MinION 361,861 34 10,643.0 9349.0
  1. *Downloaded from https://github.com/nanopore-wgs-consortium/NA12878