Table 2 Dataset information
From: Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads
Name | Type | Sequencer | Individual ID | Accession number | Bases | Reads | Average length | Median |
|---|---|---|---|---|---|---|---|---|
rel3 | Human genome | MinION | NA12878 | * | 91,240,120,433 | 14,183,584 | 6432.8 | 4617.0 |
SRR3197748 | Human genome | RSII | NA12878 | SRR3197748 | 176,931,641,323 | 40,820,704 | 4334.4 | 3053.0 |
ERR2585112-5 | Human genome | PromethION | NA19240 | ERR2585112-5 | 185,056,318,464 | 13,134,890 | 14,088.9 | 12,551.0 |
BAFME | Human genome | Sequel | Private | Private | 44,835,599,221 | 6,174,384 | 7261.6 | 6324.0 |
CAA-15 | Plasmid | MinION | – | DRR140497 | 3,312,623 | 726 | 4562.8 | 4689.5 |
CAA-109 | Plasmid | MinION | – | DRR140498 | 2,861,064 | 597 | 4792.4 | 4962.0 |
GGGGCC-52 | Plasmid | MinION | – | DRR140499 | 228,298,911 | 50,884 | 4486.7 | 4439.0 |
GGGGCC-21 | Plasmid | MinION | – | DRR140500 | 305,112,100 | 71,016 | 4296.4 | 4600.0 |
CAG-6 | Plasmid | MinION | – | DRR140501 | 170,853,052 | 59,808 | 2856.7 | 2935.0 |
CAG-18 | Plasmid | MinION | – | DRR140502 | 177,739,795 | 31,644 | 5616.9 | 5887.0 |
CAG-30 | Plasmid | MinION | – | DRR140503 | 420,957,360 | 142,000 | 2964.5 | 2999.0 |
CAG-30-DraIII | Plasmid | MinION | – | DRR140504 | 104,545,063 | 33,551 | 3116.0 | 3026.0 |
CAG-70 | Plasmid | MinION | – | DRR140505 | 64,609,201 | 18,232 | 3543.7 | 3091.5 |
CAG-130 | Plasmid | MinION | – | DRR140506 | 10,215,540 | 2135 | 4784.8 | 5002.0 |
CCTG-45 | Plasmid | MinION | – | DRR140507 | 3,675,433 | 875 | 4200.5 | 4605.0 |
SCA10-subjectA | Plasmid | RSII | – | SRR2080459 | 92,385,186 | 81,623 | 1131.9 | 642.0 |
SCA10-subjectB | Plasmid | RSII | – | SRR2081063 | 303,000,762 | 81,740 | 3706.9 | 2605.0 |
SCA10-subjectC- | Plasmid | RSII | – | SRR2082412 | 157,578,422 | 81,741 | 1927.8 | 893.0 |
SCA10-subjectC- | Plasmid | RSII | – | SRR2082428 | 611,539,771 | 163,476 | 3740.9 | 1834.0 |
AR-chimera | rel3-plasmid | MinION | – | – | 869,853 | 41 | 21,215.9 | 13,224.0 |
HTT-chimera | rel3-plasmid | MinION | – | – | 518,235 | 40 | 12,955.9 | 7462.5 |
CACNA1A-chimera | rel3-plasmid | MinION | – | – | 387,962 | 35 | 11,084.6 | 9411.0 |
C9orf72-chimera | rel3-plasmid | MinION | – | – | 330,265 | 26 | 12,702.5 | 9054.5 |
ATXN2-chimera | rel3-plasmid | MinION | – | – | 627,855 | 40 | 15,696.4 | 8155.0 |
ATXN3-chimera | rel3-plasmid | MinION | – | – | 465,481 | 30 | 15,516.0 | 14,225.0 |
ATXN7-chimera | rel3-plasmid | MinION | – | – | 795,136 | 48 | 16,565.3 | 9921.5 |
ATN1-chimera | rel3-plasmid | MinION | – | – | 374,363 | 38 | 9851.7 | 8863.0 |
PPP2R2B-chimera | rel3-plasmid | MinION | – | – | 334,450 | 21 | 15,926.2 | 8899.0 |
CNBP-chimera | rel3-plasmid | MinION | – | – | 361,861 | 34 | 10,643.0 | 9349.0 |