Skip to main content

Table 1 Chimera reads

From: Tandem-genotypes: robust detection of tandem repeat expansions from long DNA reads

chr Start End Repeat Gene Region Repeat number in reference Inserted repeat 1 Inserted repeat 2 Expected change 1 Expected change 2 Read number 1 Read number 2 Tandem-genotypes detected Total mapped reads
chr3 63,912,686 63,912,715 CAG ATXN7 Coding 10 6 30 − 4 20 24 24 28 30
chr3 129,172,577 129,172,656 CCTG CNBP Intron 21 Raw data 45 NA 24 18 17 31 33
chr4 3,074,877 3,074,933 CAG HTT Coding 21 6 70 − 15 49 21 20 31 38
chr5 146,878,729 146,878,758 CAG PPP2R2B Intron 10 6 70 − 4 60 11 10 21 21
chr9 27,573,529 27,573,546 GGGGCC C9orf72 Intron 3 21 52 18 49 14 14 23 26
chr12 6,936,729 6,936,773 CAG ATN1 Coding 15 18 70 3 55 18 20 36 38
chr12 111,598,951 111,599,019 CAG ATXN2 Coding 23 30 70 7 47 20 20 34 36
chr14 92,071,011 92,071,034 CAG ATXN3 Coding 10 6 130 − 4 120 15 15 30 30
chr19 13,207,859 13,207,897 CAG CACNA1A Coding 13 6 30 − 7 17 18 17 31 34
chrX 67,545,318 67,545,383 CAG AR Coding 23 18 70 − 5 47 21 20 18 22