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Fig. 4 | Genome Biology

Fig. 4

From: PAGA: graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

Fig. 4

PAGA applied to zebrafish embryo data of Wagner et al. [30]. a PAGA graphs obtained after running PAGA on partitions corresponding to embryo days, coarse cell types, more fine-grained cell types, and a PAGA-initialized single-cell embedding. Cell type assignments are from the original publication. b Performance measurements of the PAGA prediction compared to the reference graph of Wagner et al. show high accuracy. False-positive edges and false-negative edges for the threshold indicated by a vertical line in the left panel are also shown

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