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Fig. 3 | Genome Biology

Fig. 3

From: Measuring the reproducibility and quality of Hi-C data

Fig. 3

Effects of resolution on reproducibility measures. a Reproducibility scores assigned to biological replicate (blue), non-replicate (red), and pseudo-replicate (purple) pairs from HepG2 and HeLa Hi-C datasets at 10-kb, 40-kb and 500-kb resolutions. b Reproducibility scores assigned to different cell types at different resolutions, plotted as a function of noise level. c Reproducibility scores assigned to downsampled biological replicate pairs at different resolutions. Both the HepG2 and HeLa datasets contain > 400 million read pairs

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