Skip to main content
Fig. 2 | Genome Biology

Fig. 2

From: Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets using protocol-specific bias modeling

Fig. 2

The task of finding open chromatin regions saturates at medium depth. a Number of reads after processing in the 11 HEK293 ATAC-seq libraries with different library depths. The 2 biological replicates are shown in blue and red, with the shades representing the technical replicates. b Numbers of reproducible peaks found with the JAMM-IDR strategy at different depths. c The overlaps between 1 set of peaks in b shown for high vs. medium (left), high vs. low (middle), and medium vs. low sets (right)

Back to article page