Table 3 Performance of saving and loading databases and their memory and file size
From: CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing
Data set | #bits | Raw counts | Size [MiB] | Time [ms] | ||
|---|---|---|---|---|---|---|
| Â | Â | Â | Memory | File | Save | Load |
Baron2016-human | 128 | - | 3.1 | 2.9 | 2.3 | 2.4 |
| Â | Â | + | 10.9 | 10.7 | 6.5 | 3.1 |
| Â | 256 | - | 5.4 | 5.2 | 3.7 | 5.3 |
| Â | Â | + | 13.2 | 13.0 | 8.0 | 3.6 |
Shekhar2016 | 128 | - | 8.2 | 7.8 | 5.6 | 8.3 |
| Â | Â | + | 29.7 | 29.3 | 16.3 | 6.7 |
| Â | 256 | - | 14.6 | 14.1 | 9.1 | 8.3 |
| Â | Â | + | 36.1 | 35.7 | 20.7 | 11.1 |
Plass2018 | 128 | - | 6.7 | 6.4 | 4.7 | 5.0 |
| Â | Â | + | 17.5 | 17.2 | 10.4 | 6.2 |
| Â | 256 | - | 12.0 | 11.6 | 8.0 | 9.6 |
| Â | Â | + | 22.8 | 22.4 | 14.9 | 9.2 |
TabulaMuris-chromium | 128 | - | 13.8 | 13.0 | 8.6 | 12.5 |
| Â | Â | + | 67.2 | 66.5 | 35.3 | 16.9 |
| Â | 256 | - | 24.9 | 24.2 | 13.8 | 18.0 |
| Â | Â | + | 78.3 | 77.6 | 42.4 | 21.9 |