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Table 2 Enrichment of miRNA seed match in the target sites

From: Prediction of functional microRNA targets by integrative modeling of microRNA binding and target expression data

Seed type Matching positions in miRNA Downregulated targets Non-targets Enrichment ratio
Seed6 pos 2–7 0.86 0.36 2.40
Seed7a pos 1–7 0.46 0.13 3.45
Seed7b pos 2–8 0.62 0.15 4.18
Seed7A1 pos 2–7 + A at target pos 1 0.52 0.13 4.10
Seed8 pos 1–8 0.26 0.05 5.48
Seed8A1 pos 2–8 + A at target pos1 0.30 0.04 6.83
Seed7b_not_U Exclude miRNAs with 5′-U 0.60 0.15 3.97
Seed8_not_U Exclude miRNAs with 5′-U 0.19 0.06 3.32
Seed8A1_not_U Exclude miRNAs with 5′-U 0.34 0.05 6.95