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Table 1 Twenty-five miRNAs analyzed in the RNA-seq experiments

From: Prediction of functional microRNA targets by integrative modeling of microRNA binding and target expression data

miRNA name

miRNA sequence

Identified targets

hsa-let-7c-5p

UGAGGUAGUAGGUUGUAUGGUU

31

hsa-miR-107

AGCAGCAUUGUACAGGGCUAUCA

35

hsa-miR-10a-5p

UACCCUGUAGAUCCGAAUUUGUG

32

hsa-miR-124-3p

UAAGGCACGCGGUGAAUGCC

151

hsa-miR-126-3p

UCGUACCGUGAGUAAUAAUGCG

11

hsa-miR-126-5p

CAUUAUUACUUUUGGUACGCG

48

hsa-miR-133b

UUUGGUCCCCUUCAACCAGCUA

108

hsa-miR-142-3p

UGUAGUGUUUCCUACUUUAUGGA

108

hsa-miR-145-5p

GUCCAGUUUUCCCAGGAAUCCCU

82

hsa-miR-146a-5p

UGAGAACUGAAUUCCAUGGGUU

42

hsa-miR-155-5p

UUAAUGCUAAUCGUGAUAGGGGU

154

hsa-miR-15a-5p

UAGCAGCACAUAAUGGUUUGUG

108

hsa-miR-16-5p

UAGCAGCACGUAAAUAUUGGCG

122

hsa-miR-17-5p

CAAAGUGCUUACAGUGCAGGUAG

74

hsa-miR-193b-3p

AACUGGCCCUCAAAGUCCCGCU

102

hsa-miR-200a-3p

UAACACUGUCUGGUAACGAUGU

35

hsa-miR-200b-3p

UAAUACUGCCUGGUAAUGAUGA

126

hsa-miR-200c-3p

UAAUACUGCCGGGUAAUGAUGGA

93

hsa-miR-206

UGGAAUGUAAGGAAGUGUGUGG

206

hsa-miR-210-3p

CUGUGCGUGUGACAGCGGCUGA

43

hsa-miR-21-5p

UAGCUUAUCAGACUGAUGUUGA

11

hsa-miR-31-5p

AGGCAAGAUGCUGGCAUAGCU

85

hsa-miR-34a-5p

UGGCAGUGUCUUAGCUGGUUGU

155

hsa-miR-9-3p

AUAAAGCUAGAUAACCGAAAGU

182

hsa-miR-9-5p

UCUUUGGUUAUCUAGCUGUAUGA

106

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Genome Biology

ISSN: 1474-760X

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