Table 1 References and software URLs of hybrid-correction methods for LRs
From: A comparative evaluation of hybrid error correction methods for error-prone long reads
Error correction methods tested | Main strategy | Author, year | Version in test | Reference | Software URL |
|---|---|---|---|---|---|
FMLRC | Graph-based | (Wang et al., 2018) | 0.1.2 | [34] | https://github.com/holtjma/fmlrc |
Jabba | Graph-based | (Miclotte et al., 2015) | 1.0.0 | [33] | https://github.com/biointec/jabba |
LoRDEC | Graph-based | (Salmela et al., 2014) | 0.5.3 | [32] | http://www.atgc-montpellier.fr/lordec/ |
HALC | Dual-based | (Bao et al., 2017) | 1.1 | [36] | https://github.com/lanl001/halc |
CoLoRMap | Dual-based | (Haghshenas et al., 2016) | 2016-11-30 | [35] | https://github.com/sfu-compbio/colormap |
ECTools | Alignment-based | (Lee et al., 2014) | 2014-06-27 | [30] | https://github.com/jgurtowski/ectools |
LSC | Alignment-based | (Au et al., 2012) | 1.beta | [28] | https://www.healthcare.uiowa.edu/labs/au/LSC/ |
Nanocorr | Alignment-based | (Goodwin et al., 2015) | 2016-02-27 | [31] | https://github.com/jgurtowski/Nanocorr |
pacBioToCA | Alignment-based | (Koren et al., 2012, 2013) | From Celera Assembler version 8.1 | [27] | https://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/ |
proovread | Alignment-based | (Hackl et al., 2014) | 2.14.0 | [29] | https://github.com/BioInf-Wuerzburg/proovread |