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Table 1 References and software URLs of hybrid-correction methods for LRs

From: A comparative evaluation of hybrid error correction methods for error-prone long reads

Error correction methods tested Main strategy Author, year Version in test Reference Software URL
FMLRC Graph-based (Wang et al., 2018) 0.1.2 [34] https://github.com/holtjma/fmlrc
Jabba Graph-based (Miclotte et al., 2015) 1.0.0 [33] https://github.com/biointec/jabba
LoRDEC Graph-based (Salmela et al., 2014) 0.5.3 [32] http://www.atgc-montpellier.fr/lordec/
HALC Dual-based (Bao et al., 2017) 1.1 [36] https://github.com/lanl001/halc
CoLoRMap Dual-based (Haghshenas et al., 2016) 2016-11-30 [35] https://github.com/sfu-compbio/colormap
ECTools Alignment-based (Lee et al., 2014) 2014-06-27 [30] https://github.com/jgurtowski/ectools
LSC Alignment-based (Au et al., 2012) 1.beta [28] https://www.healthcare.uiowa.edu/labs/au/LSC/
Nanocorr Alignment-based (Goodwin et al., 2015) 2016-02-27 [31] https://github.com/jgurtowski/Nanocorr
pacBioToCA Alignment-based (Koren et al., 2012, 2013) From Celera Assembler version 8.1 [27] https://sourceforge.net/projects/wgs-assembler/files/wgs-assembler/
proovread Alignment-based (Hackl et al., 2014) 2.14.0 [29] https://github.com/BioInf-Wuerzburg/proovread