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Fig. 3 | Genome Biology

Fig. 3

From: CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing

Fig. 3

Assessment of CNV calls on WES data from the 1000 Genomes Project by microarray and WGS calls. CNV calls by XHMM, EXCAVATOR, CODEX, and CODEX2 are validated against genotyping calls after quality controls from a HapMap 3 Consortium [25], b Conrad et al. [24], and (c) McCarroll et al. [23], as well as WGS CNV calls from the phase 3 release (d) [2]. Gray contours show F-measures as harmonic means of precision and recall rates. CODEX2 has significantly improved precision and recall for common CNVs and has the highest F-measure among all methods

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