From: KrakenUniq: confident and fast metagenomics classification using unique k-mer counts
Data Type | Rank | Statistic | orig | std | nt | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|
reads | k-mers | %diff | reads | k-mers | %diff | reads | k-mers | %diff | |||
Bio | Genus | Recall | 0.90 | 0.93 | +4.0% | 0.89 | 0.94 | +6.2% | 0.91 | 0.99 | +8.9% |
F1 | 0.95 | 0.96 | +1.8% | 0.95 | 0.97 | +2.6% | 0.96 | 0.99 | +3.4% | ||
Species | Recall | 0.85 | 0.87 | +2.6% | 0.70 | 0.78 | +11.8% | 0.95 | 0.98 | +3.1% | |
F1 | 0.94 | 0.94 | +0.7% | 0.90 | 0.92 | +2.5% | 0.97 | 0.99 | +1.6% | ||
Sim | Genus | Recall | 0.96 | 0.94 | -2.1% | 0.95 | 0.97 | +2.5% | 0.98 | 0.99 | +0.8% |
F1 | 0.98 | 0.98 | -0.0% | 0.98 | 0.98 | +0.3% | 0.99 | 0.99 | +0.3% | ||
Species | Recall | 0.92 | 0.93 | +0.6% | 0.88 | 0.88 | +0.3% | 0.90 | 0.90 | -0.1% | |
F1 | 0.97 | 0.97 | +0.3% | 0.94 | 0.94 | +0.5% | 0.96 | 0.96 | -0.1% |